PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016512361.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 94aa    MW: 10836.2 Da    PI: 9.7136
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016512361.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.41e-10449345
                     SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwq 45
                     +WTt   +++ +a  ++ +g    +W  Ia+++g g++ +++k ++ 
   XP_016512361.1  4 NWTTKQNKRFEEALVMYDKGtsseRWQNIAKYVG-GKSVEEVKRHYE 49
                     8*********************************.**********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.7E-6154IPR001005SANT/Myb domain
PROSITE profilePS5129312.916156IPR017884SANT domain
Gene3DG3DSA:1.10.10.602.6E-5358IPR009057Homeodomain-like
SuperFamilySSF466893.67E-13459IPR009057Homeodomain-like
PfamPF002495.4E-8449IPR001005SANT/Myb domain
CDDcd001671.39E-6452No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MATNWTTKQN KRFEEALVMY DKGTSSERWQ NIAKYVGGKS VEEVKRHYEL LVKDITQIEN  60
GQVPLPNYRT TTAESNARGG YANEQRLLKN LSLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-255941193RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009605567.18e-65PREDICTED: protein RADIALIS-like 1
RefseqXP_016512361.18e-65PREDICTED: protein RADIALIS-like 1
SwissprotF4JVB82e-33RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLM1CPV02e-51M1CPV0_SOLTU; Uncharacterized protein
STRINGSolyc10g080920.1.11e-50(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.11e-34RAD-like 1